I'm stupid and hopefully I can help someone after figuring out how to fix my mistake.
I want to add during this process (not sure if normal) the switch took about 5 minutes to boot sometimes as is it was booting in slow motion. Do not power off the switch if you believe you booted it correctly or if it's hanging on the switch logo, mine eventually booted and started working normally afterwords.
To start this is what I did:
1. Downloaded ChoiDujourNX (link on first page from OP)
2. Downloaded software 6.0.0-50 (also on first page from OP, search for it)
3. I launched ChoiDujourNX from SX OS (yes it did work for me) and installed 6.0 from it, however I did the Non-exfat version while I was using an exfat card, my mistake.
At this point I could launch into 6.0 but since it didn't support the sd card I could not go into cfw/homebrew/access any games/apps. I'm banned from CDN so I can't download the update through Nintendo.
Now to the part where I fixed it.
1. I got my other sd card, an sdhc (pretty sure an shxc wouldnt work but not tested) but when trying to launch SX OS, it wouldn't detect the boot.dat even though it was on there and previously formatted by this switch.
2. On this sd card was 6.0.0-50 update, ChoiDujourNX, and boot.dat
3. To fix this I launched into 6.0 with the exfat card and once booted I took it out and put in the sdhc card with the update.
4. The switch will tell you to restart for the sd card DON'T RESTART, I went to the album and now SX OS was working. I then went to homebrew and updated to 6.0.0-50 with exfat and now everything works again.
I'm not very well educated on the proper ways to do these things, I winged it and fixed my mistake. If you have any questions add me on discord Chair#8045, don't message me on here I probably will not see it.