Grabbed CHMM 1.3 yesterday (1.4 kept saying I had no themes) and it worked fine on my 9.9.0-26U 3DS XL via Ninjhax 2. Woke up this morning and tried switching themes and get this now whenever I try applying a theme:
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EDIT: Looks like I got ahead of myself. I ejected and reinserted my SD at the homebrew launcher menu and everything works fine again =)
WTF the circle pad oO
xD