Homebrew Checkpoint stuck on boot up screen after opening Persona Q2 and New Super Mario Bros 2.

El_Scorcho

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For some reason, when I open Persona Q2 or New Super Mario Bros.2, and switch/close the application to Checkpoint, it loads and gets stuck on its boot-up screen.
The most I've waited was 5-6 mins for the loading screen to finish and it doesn't look like it'll finish at all.

I've tested all of my physical games and for some reason, PersonaQ2 and NSMB2 are the only ones that do this. I've installed a dump copy of Persona Q2 to see if it's just the cartridge but it turns out it doesn't matter which version, the issue still happens.

The only way I can fix this is by holding the power button until my New 3DS XL is completely off but obviously this very annoying to do this every time.

Has anyone experienced the same issue and is there a way to fix this?
 
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