That's Breath of the Wild's fault. It shuts off all Bluetooth controllers on startup. Can confirm, I have an official Pro Controller.Posting again since my original comment got lost in temp mode: I tested my version 2 PS4 controller and it worked great, it even works for Retroarch. It turns off when launching Breath of the Wild, but pressing the PS button turns it back on, no other game that I tested had any issues, also pressing the PS button during gameplay brings up the Wii U menu.