Before I start, be warned, a lot of huge spoilers will be revealed here, so if you haven't finished the game with the true ending (ending no.1), do not read this.
First of all, we learn that Zero is Akane, and that her motives were revenge and saving her. That's the strange part. If Zero is Akane in the past comunicating with Junpei, who is the Akane in the present ? Since Junpei haven't saved her yet, how can she be there ? Also, I think she is too young to imagine a plan like that, even with the help of his brother. By the way, how did Zero/Akane do to comunicate with her brother ? My theory is that morphogenic fields are not affected by time and reality. So every memory of every Junpei has been written in the morphogenic field. That would be represented by all the alternate endings in the game. That means that the Akane from the past know every possibilities, and used that knowledge to create a scenario in which Junpei was able to help her. But still, it doesn't explain how Akane from the future is still alive since Seven and Aoi(Santa, her brother) saw her die... Or maybe it was in a alternate reality, and then the Akane saved by Junpei is not the one in this reality... Anyway. If someone can explain me that part of the story
And if I'm not wrong, the woman doing hitchhiking in the desert is Alice. Who did free her, and why ? I thought that the coffin was already empty when Ace discoverd it, even so, what does she do in the Nevada desert ? She was supposed to be in the Gigantic. And I will ignore the fact that I don't think that doing hitchhiking was a common thing in ancient egypt...
And if I'm not wrong, the woman doing hitchhiking in the desert is Alice. Who did free her, and why ? I thought that the coffin was already empty when Ace discoverd it, even so, what does she do in the Nevada desert ? She was supposed to be in the Gigantic. And I will ignore the fact that I don't think that doing hitchhiking was a common thing in ancient egypt...