I've made peace with my stupidity, since it might as well be a blank console i can transfer my actual personal system over.Nope, If you keep your cia files after installing them then they should still be there on the sdcard.
Will i have to redo all the CFW stuff like i did today?
I would think everything not in the 3ds folder can be reused to save some time.
One i've set everything back up, how do i put 3ds games back on and get the icons to come back?