Ok so i did a fresh install of atmosphere with emuiibo 0.3.1 and this mod and it's still stuck on initializing settings, I put kosmos toolbox and no sys modules are running... so I'm out of ideas, I have the emuiibo folder with only emulated json amiibo, emuiibo by itself works fine but you can't see what amiibo is being used obviously so i was hopeful that this would work.
Edit: Tried with a second switch running kosmos, same thing upon opening amiiswap it just hangs on "Initializing settings" I let it set there for 10 minutes with no change so I'm not sure what's causing it as it's literally clean atmosphere/kosmos with emuiibo 0.3.1 and this mod, I tried with and without amiibos in the amiibo folder, etc.