Question for everyone:
Some plugins require the game data to be in the apps/ folder and not in root. So in these cases the dol files could also be launched from apps/..., instead of wiiflow/plugins/...
Is it ok for you? Or do you prefer to have a copy of every dol in wiiflow/plugins/... ?
It seems we have to include the apps folders in the pack anyway
I'm ok with dol only in apps/ if it is required. It will keep pack lighter/cleaner without confusion of which dol is actually needed.