Yea, I forgot about that, read the edit.
I guess if you can't do the hactoolnet thing, you could make a rawnand and boot0/1 backup with hekate, boot into CFW, restore the save with checkpoint, shutdown the system, extract your saves from the user partition, restore the rawnand and boot0/1 backups, and copy the saves you extracted from your user parition earlier back over
Yeah I would use hactoolnet but I have no idea how to use it, when I look at the github I just get very confused LOL Sorry..
But, Oh that makes so much more sense. I completely wasnt thinking that restoring them through checkpoint would assign them to the console, whenever I thought of using checkpoint I figured there was no point because then the NAND isnt clean. There wouldnt be evidence of using checkpoint or something else that Nintendo might flag with this method would there?