I dunno if GodMode9 can extract a decrypted .cia into their romfs and exefs components. There is a program called ctrtool you run on desktop that can produce those folders @ github ... /profi200/Project_CTR/releases Here's the instruction on how to use it: @ github ... /ihaveamac/3DS-rom-tools/wiki/Extract-a-game-or-application-in-.cia-format Edit : @Eddypikachu Nevermind! I figured out how you extract the files in a decrypted CIA. - In GodMode9, hover over your .cia file and press A. - Select CIA image options... - Select Mount image to drive and press <A> yes. You should now be in [G:] CIA GAME IMAGE which list all the files within the mounted CIA. - Hold the L-shoulder button and scroll down to highlight everything in yellow. - Press A on one of the '.bin' or '.app' items you've selected. The first one/two items listed with a bunch of numbers and zeros are directories. - You should now see on the bottom screen the option Copy to 0:/gm9/out . Select <A> yes. - In the gm9/out folder, you should find all the extracted files from your CIA which you can now copy over to your computer to edit and rebuild.